Maruyama H, Prieto EI, Nambu T, Mashimo C, Kashiwagi K, Okinaga T, Atomi H and Takeyasu K (2020) Different Proteins Mediate Step-Wise Chromosome Architectures in Thermoplasma acidophilum and Pyrobaculum calidifontis. Front. Microbiol. 11:1247. doi: 10.3389/fmicb.2020.01247

Cris Francis C. Barbosa, Rhosener Bhea L. Koh. Vermando M. Aquino and Leny C. Galvez (2020). Diagnosis of Multicomponent Babuviruses Infecting Abaca by Simultaneous Amplification of their Genome Segments. Philippine Journal of Science 149 (2) 373-382. https://philjournalsci.dost.gov.ph/images/pdf/pjs_pdf/vol149no2/accurate_diagnosis_of_multicomponent_babuviruse_.pdf

Adrian Paul S. Tan and Cynthia T. Hedreyda (2020). Analysis and Cloning of Alkane 1- monooxygenase and Catechol 1,2-dioxygenase Genes from Acinetobacter baumannii Isolated from the Philippine Pasig River Philippine Journal of Science 149 (1): 159-168. http://philjournalsci.dost.gov.ph/images/pdf/pjs_pdf/vol149no1/sequence_analysis_and_cloning_of_alkane_.pdf

Ghodsinia AA, Lego J-AMT, Garcia RL. Mutation-Associated Phenotypic Heterogeneity in Novel and Canonical PIK3CA Helical and Kinase Domain Mutants. Cells. 2020; 9(5):1116.  https://doi.org/10.3390/cells9051116

Steven Kregel, Pia Bagamasbad, Shihan He, Elizabeth LaPensee, Yemi Raji, Michele Brogley, Arul Chinnaiyan, Marcin Cieslik, Diane M Robins (2020) Differential modulation of the androgen receptor for prostate cancer therapy depends on the DNA response element, Nucleic Acids Research, , gkaa178, https://doi.org/10.1093/nar/gkaa178

Itang, L.A.M., Stec, D., Mapalo, M.A., Mirano-Bascos, D. & Michalczyk, L. (2020). An integrative description of Mesobiotus dilimanensis, a new tardigrade species from the Philippines (Eutardigrada: Macrobiotidae: furciger group). RAFFLES BULLETIN OF ZOOLOGY, 68, 19–31.
https://doi.org/10.26107/RBZ-2020-0003

Roquid, K.R., Alcantara, K.M., & Garcia, R.L. (2020). Identification and validation of mRNA 3’untranslated regions of DNMT3B and TET3 as novel competing endogenous RNAs of the tumor suppressor PTEN. International Journal of Oncology, 56, 544-558. https://doi.org/10.3892/ijo.2019.4947

L. C. Galvez, R. B. L. Koh, C. F. C. Barbosa & V. M. Aquino (2020). Multiplex reverse transcription-polymerase chain reaction for simultaneous detection of banana bract mosaic virus (BBrMV) and sugarcane mosaic virus (SCMV) in abaca, Canadian Journal of Plant Pathology, https://doi.org/10.1080/07060661.2019.1708810

Marc A. Mapalo, Kazuharu Arakawa, Caitlin M. Baker, Dennis K. Persson, Denise Mirano-Bascos and Gonzalo Giribet (2020). The Unique Antimicrobial Recognition and Signaling Pathways in Tardigrades with a Comparison Across Ecdysozoa.
G3: GENES, GENOMES, GENETICS, 10(1). https://doi.org/10.1534/g3.119.400734

Leny C. Galvez, Cris Francis C. Barbosa, Rhosener Bhea L. Koh, Vermando M. Aquino (2020). Loop-mediated isothermal amplification (LAMP) assays for the detection of abaca bunchy top virus and banana bunchy top virus in abaca. Crop Protection, 131. DOI: 10.1016/j.cropro.2020.105101

Boonchuen, P., Maralit, B.A., Jaree, P. et al. MicroRNA and mRNA interactions coordinate the immune response in non-lethal heat stressed Litopenaeus vannamei against AHPND-causing Vibrio parahaemolyticus. Sci Rep 10, 787 (2020). https://doi.org/10.1038/s41598-019-57409-4

Rhosener Bhea L. Koh, Fides Angeli D. L. C. Zaulda, Cris Francis C. Barbosa, Vermando M. Aquino & Leny C. Galvez (2020). Immunodiagnosis of bunchy top viruses in abaca with polyclonal antibodies against their recombinant coat proteins, Archives of Phytopathology and Plant Protection, https://doi.org/10.1080/03235408.2020.1727106

2019

Alcantara K.M.M., Garcia R.L. (2019). MicroRNA‑92a promotes cell proliferation, migration and survival by directly targeting the tumor suppressor gene NF2 in colorectal and lung cancer cells. Oncology Reports 41(4)

Alcantara, K.M.M.; Malapit, J.R.P.; Yu, R.T.D.; Garrido, J.A.M.G.; Rigor, J.P.T.; Angeles, A.K.J.; Cutiongco-de la Paz, E.M.; Garcia, R.L. Non-Redundant and Overlapping Oncogenic Readouts of Non-Canonical and Novel Colorectal Cancer KRAS and NRAS Mutants. Cells 2019, 8, 1557. https://doi.org/10.3390/cells8121557

Algodon S.M., Qui M.D., Estuart A. and Garcia R. (2019). SNPs in MEG3 lncRNA affect its tumor suppressive function via increased proliferative capacity and resistance to apoptosis. FEBS Open Bio 9

Amosco M.D., Tavera G.R., Villar V.A.M., Naniong J.M.A., David-Bustamante L.M.G., Williams S.M., Jose P.A., Palmes-Saloma C.P. (2019). Non-additive effects of ACVR2A in preeclampsia in a Philippine population 06 Biological Sciences 0604 Genetics. BMC Pregnancy and Childbirth 19(1)

Angeles A.K.J., Yu R.T.D., De la Paz E.M.C., Garcia R.L. (2019). Phenotypic characterization of the novel, non-hotspot oncogenic KRAS mutants E31D and E63K. Oncology Letters 18(1)

Bagamasbad P.D., Espina J.E.C., Knoedler J.R., Subramani A., Harden A.J., Denver R.J. (2019). Coordinated transcriptional regulation by thyroid hormone and glucocorticoid interaction in adult mouse hippocampus-derived neuronal cells. PLoS One 14(7).

Bascos, N.A.D., Landry, S. (2019). A History of Molecular Chaperone Structures in the Protein Data Bank. International Journal of Molecular Sciences (accepted)

Bataclan C.C., Manongdo M.A., Martija A.A., Ong T., Roquid K.A. and Garcia R. (2019). Confirmatory and Orthogonal Assays for Eliminating Artefactual Drug Bioactivities. FEBS Open Bio 8

Bautista, M.A.M., Llames, J.H.S., Sabban, E.A.V., and Villegas, L.C. (2019). Draft Genome Sequences of Ralstonia solanacearum Isolated from Banana and Tomato in the Philippines. Philippine Journal of Science 148(2)

Crisostomo, B.A., Atis, A.A.G., Mirano-Bascos, D.N.R. and Hernandez, C.C. (2019). Identification of cysteine knot peptides in four Philippine plant species using mass spectrometry and transcriptome analysis. Philippine Science Letters 12(1)

Huang, L., Ding, L., Li, X., Wang, N., Cui, W., Wang, X., Naman, C.B., Lazaro, J.E.H., Yan, X., He, S. (2019). New Dihydroisocoumarin Root Growth Inhibitors from the Sponge-Derived Fungus Aspergillus sp. NBUF87. Frontiers in Microbiology 10: 2846

Lazaro, J.E.H., Bascos, N.A.D., Tablizo, F.A., Abes, N.S., Paynaganan, R.I.DG., Miguel, M.A., Espiritu, H.M., Uy, M.R.D., Mingala, C.N., and Saloma, C.P. (2019). Genome-wide Analysis for Variants in Philippine Trypanosoma evansi Isolates with Varying Drug Resistance Profiles. Philippine Journal of Science 148(S1): 219-233

Prieto E.I., Maeshima K. (2019). Dynamic chromatin organization in the cell. Essays in Biochemistry 63(1)

Punzalan, M.R., Bautista, M.A., Emmanuel, E., Rivera, R., Rivera, S., and Saloma, C.P. (2019). Transcriptome of the Traditional Coconut Variety Laguna Tall. Philippine Journal of Science 148(2)

Uy A.G. and Garcia R. (2019). KRAS status-dependent sorting of lung cancer-associated long noncoding RNAs (lncRNAs) in exosomes released by A549 lung adenocarcinoma cells. FEBS Open Bio 9

Viola M.I. and Garcia R. (2019). The functional pseudogene INGX promotes cell cycle progression, survival and migration in HCT116 colorectal cancer cells. FEBS Open Bio 9

2018

Cruz M.C., Hedreyda, C.T. (2018). Detection of Plasmid-Borne B-Lactamase Genes in Extended-Spectrum B-Lactamase (ESBL) and Non-ESBL-Producing Escherichia coli Clinical Isolates. Philippines Journal of Science, 147 (2): 239-248. ISSN: 0031-7683

Bascos, N.A.D., Jimenez, E.C. (2018). Molecular dynamics simulations of the conformational states of a D-trytopham-containing Conus venom peptide and its all-L-amino acid analog. Current Topics in Peptide and Protein Research, Volume 19; Issue 1.

Bascos, N.A.D., Emralino, F.L.C., Liu, F.C., Concepcion, C.P., Altamia, A., Huang, Y.C., Hsieh, Y.C., Chen, C.J., Palmes-Saloma, C.. (2018). Biophysical and Functional Characterization of a Fluorescent Protein, asFP504, from a Philippine soft coral. Philippine Journal of Science, 147 (1): 65-74

Dumilag, R.V., Monotilla, W.D.. (2018). Molecular diversity and biogeography of Philippine foliose Bangiales (Rhodophyta). Journal of Applied Phycology, Volume 30, Issue 1. https://doi.org/10.1007/s10811-017-1201-8

Dy R.L., Rigano L.A., Fineran P.C. (2018). Phage-based biocontrol strategies and their application in agriculture and aquaculture. Biochemical Society Transactions 46(6)

Hampton H.G., Jackson S.A., Fagerlund R.D., Vogel A.I.M., Dy R.L., Blower T.R., Fineran P.C. (2018). Journal of Molecular Biology 430(8)

Maralit B.A., Jaree P., Boonchuen P., Tassanakajon A., Somboonwiwat K. (2018). Differentially expressed genes in hemocytes of Litopenaeus vannamei challenged with Vibrio parahaemolyticus AHPND (VP<inf>AHPND</inf>) and VP<inf>AHPND</inf> toxin. Fish and Shellfish Immunology 81

Vasquez, M.R., Jr.,  Prieto, E.I.,  Wada, M. (2018). Radio-frequency plasma-induced biocompatibility of polyimide substrates. Plasma Medicine, 8 (1), Pages 35-44.

Malit, J.J.L. and Hedreyda, C.T. (2018). Detection and Sequence Analysis of Enzyme Genes of Four Thermo-tolerant Bacillus pumilus Strains from the Philippines. Philippine Journal of Science, 147 (2).

2017

Bascos, N. A. D., Mayer, M. P., Bukau, B.,  Landry, S. J. (2017). The Hsp40 J-domain modulates Hsp70 conformation and ATPase activity with a semi-elliptical spring. Protein Science, 26(9), 1838–1851.

Cruz, M. C.,  Hedreyda, C. T. (2017). Detection of Plasmid-Borne β -Lactamase Genes in Extended- Spectrum β -Lactamase ( ESBL ) and Non-ESBL-Producing Escherichia coli Clinical Isolates. Philippine Journal of Science, 146(2), 167–175.

De la Peña, L. D., Cabillon, N. A. R., Amar, E. C., Catedral, D. D., Usero, R. C., Faisan, J. P., Saloma, C. P. (2017). Mortality of Pond-cultured Litopenaeusvannamei Associated with Acute Hepatopancreatic Necrosis Disease (AHPND) and White Spot Syndrome Virus (WSSV) Infection in the Philippines. Fish Pathology, 52(1), 38–41.

Dumilag, R. V., Aguinaldo, Z.-Z. A., Mintu, C. B., Quinto, M. P., Ame, E. C., Andres, R. C., Monotilla, W.D., … Fontanilla, I. K. C. (2017). A review of the current taxonomic status of foliose bangiales (Rhodophyta) in the Philippines. Phytotaxa, 312(1), 47–59.

Dumilag, R. V., Monotilla, W. D. (2017). Molecular diversity and biogeography of Philippine foliose Bangiales (Rhodophyta). Journal of Applied Phycology, 1–14.

Hedreyda C.T., Monsalud R.G. (2017). Species identification of thermo-tolerant bacillus isolates using 16s rDNA, gyraseB Gene (gyrB) and enzyme gene sequence analysis. Philippine Journal of Science 146(4)

Mapalo, M. A., Stec, D., Mirano-Bascos, D., Michalczyk, Ł. (2017). An integrative description of a limnoterrestrial tardigrade from the philippines, mesobiotusinsanis, new species (Eutardigrada: Macrobiotidae: Harmsworthi group). Raffles Bulletin of Zoology, 65, 440–454.

Zumaraga, M. P., Medina, P. J., Recto, J. M., Abrahan, L., Azurin, E., Tanchoco, C. C., …Palmes-Saloma, C. (2017). Targeted next generation sequencing of the entire vitamin D receptor gene reveals polymorphisms correlated with vitamin D deficiency among older Filipino women with and without fragility fracture. The Journal of Nutritional Biochemistry, 41, 98–108.

2016

Amosco M.D., Villar V.A.M., Naniong J.M.A., David-Bustamante L.M.G., Jose P.A., Palmes-Saloma C.P. (2016). VEGF-A and VEGFR1 SNPs associate with preeclampsia in a Philippine population. Clinical and Experimental Hypertension 38(7)

Dumilag, R. ., Aguinaldo, Z.-Z. ., Mintu, C. B., Quinto, M. P., Ame, E. ., Andres, R. C., Monotilla, W. D., et al. (2016). Morphological and molecular confirmation of the occurrence of pyropiatanegashimensis (bangiales, rhodophyta) from Palaui Is., Sta. Ana, Cagayan, Philippines. Phytotaxa, 255(1), 83-90.

Del Rosario JMM, Lazaro JEHL. Combinations of chloroquine with tigecycline and telithromycin induce early onset of apoptosis in Plasmodium falciparum in vitro. Acta Medica Philippina 50(4): 302-312, 2016.

Hallare AV, Castillo RL, De Guzman ALB, Balolong MPB, Lazaro JEHL. Downregulation of liver hsp70 in zebrafish exposed to Jatropha curcas seed cake extract. Cogent Environmental Science 2(1), 2016. DOI 10.1080/23311843.2016.1179563

2015

Bagamasbad P.D., Bonett R.M., Sachs L., Buisine N., Raj S., Knoedler J.R., Kyono Y., Ruan Y., Ruan X., Denver R.J. (2015). Deciphering the regulatory logic of an ancient, ultraconserved nuclear receptor enhancer module. Molecular Endocrinology 29(6).

Bascos, N. (2015). Molecular docking: A practical approach  for protein interaction analysis. Biotechnology and bioinformatics: advances and applications for bioenergy, bioremediation, and biopharmaceutical research (pp. 345-354).

Bascos, N. A. D.,  Landry, S. J. (2015). Structural Rigidity Regulates Functional Interactions in the Hsp40-Hsp70 Molecular Machine. BIOPHYSICAL JOURNAL, 108(2), 210a. Biophysical Society.

Bautista, M. A. ., Bhandary, B., Wijeratne, A. ., Michel, A. P., Hoy, C. W.,  Mittapalli, O. (2015). Evidence for trade-offs in detoxification and chemosensation gene signatures in Plutellaxylostella. Pest Management Science, 71(3), 423-432.

de la Pena, L., Cabillon, N., Catedral, D., Amar, E., Usero, R., Monotilla, W., Calpe, A., et al. (2015). Acute hepatopancreatic necrosis disease (AHPND) outbreaks in Penaeusvannamei and P. monodon cultured in the Philippines. DISEASES OF AQUATIC ORGANISMS, 116(3), 251-254.

Juntila, D. J., Bautista, M. A.,  Monotilla, W. (2015). Biomass and lipid production of a local isolate Chlorella sorokiniana under mixotrophic growth conditions. Bioresource Technology, 191, 395-398.

Saloma, C., Perez, G. J., Gavile, C. A., Ick-Joson, J. J.,  Palmes-Saloma, C. (2015). Prior individual training and self-organized queuing during group emergency escape of mice from water pool. PLoS ONE, 10(2).

2014

Bangi, J.C. and V.M. Aquino. (2014). Genetic diversity analysis of traditional upland rice cultivars in Arakan Valley complex, Cotabato, Philippines using SSR Markers. The Asian International Journal of Life Sciences 23(2)

Cabria G.L.B., Argayosa V.B., Lazaro J.E.H., Argayosa A.M., Arcilla C.A. (2014). Draft genome sequence of haloalkaliphilic Exiguobacterium sp. strain AB2 from Manleluag Ophiolitic Spring, Philippines. Genome Announcements 2(4)

Dalet J.T., Saloma C.P., Olivera B.M., Heralde F.M. (2014). Karyological analysis and FISH physical mapping of 18S rDNA genes, (GATA)<inf>n</inf> centromeric and (TTAGGG)<inf>n</inf> telomeric sequences in Conus magus Linnaeus, 1758. Journal of Molluscan Studies 81(2)

Gonzales D.T., Saloma C.P. (2014). A bioinformatics survey for conotoxin-like sequences in three turrid snail venom duct transcriptomes. Toxicon 92

Maruyama H., Ohniwa R.L., Prieto E., Hejna J., Takeyasu K. (2014). Genome-folding mechanisms in the three domains of life revealed by AFM.

Ramirez, K.R. and V.M. Aquino. (2014). Characterization and expression of the coat protein gene of banana bract mosaic virus isolate infecting abaca (Musa textilis Nee) in the Philippines. The Asian International Journal of Life Sciences 23(2)

2012

Bagamasbad P., Ziera T., Borden S.A., Bonett R.M., Rozeboom A.M., Seasholtz A., Denver R.J. (2012). Molecular basis for glucocorticoid induction of the krüppel-like factor 9 gene in hippocampal neurons. Endocrinology 153(11)

2013

Ahanchede A., Alfaya J.E.F., Andersen L.W., Azam D., Bautista M.A.M., Besnard A.-L., Bigatti G., Bouetard A., Coutellec M.-A., Ewedje E.-E.B.K., Fuseya R., Garcia-Jimenez R., Haratian M., Hardy O.J., Holm L.-E., Hoy C.W., Koshimizu E., Loeschcke V., Lopez-Marquez V., Machado C.A., Machordom A., Marchi C., Michel A.P., Micheneau C., Mittapalli O., Nagai T., Okamoto N., Pan Y., Panitz F., Safaie N., Sakamoto T., Sharifnabi B., Tian E.-W., Yu H. (2013). Permanent Genetic Resources added to Molecular Ecology Resources Database 1 August 2012 – 30 September 2012. Molecular Ecology Resources 13(1)

Mirano-Bascos D., Tongol-Rivera P., Villacorte E.A., Escueta A.D., Kawazu S.-I., Kano S. (2013). Characterization of the population demographics and the MSP-1 block 2 allele gene frequencies of P. falciparum infected individuals in Davao, Philippines. Tropical Medicine and Health 41(1)

Natividad M.F., Torres-Villanueva C.A.T., Saloma C.P. (2013). Superantigen involvement and susceptibility factors in Kawasaki disease: Profiles of TCR Vβ2+ T cells and HLA-DRB1, TNF-α and ITPKC genes among filipino patients. International Journal of Molecular Epidemiology and Genetics 4(1)

Villar V.A.M., Jones J.E., Armando I., Asico L.D., Escano Jr. C.S., Lee H., Wang X., Yang Y., Pascua-Crusan A.M., Palmes-Saloma C.P., Felder R.A., Jose P.A. (2013). Sorting nexin 1 loss results in D<inf>5</inf> dopamine receptor dysfunction in human renal proximal tubule cells and hypertension in mice. Journal of Biological Chemistry 288(1)

2010

Alberto, R.T. and V.M. Aquino. (2010). Characterization of Colletotrichum gloeosporioides (Penzig) Penzig and Sacc. (Anthracnose) and Gibberella moniliformis Wineland (Twister) infecting onions in the Philippines. The Asian International Journal of Life Sciences 19(1)

Mirano-Bascos D., Steede N.K., Robinson J.E., Landry S.J. (2010). Influence of disulfide-stabilized structure on the specificity of helper T-cell and antibody responses to HIV envelope glycoprotein gp120. Journal of Virology 84(7)

Monotilla W.D., Notoya M. (2010). Growth and development of porphyra marcosii (Bangiales, Rhodophyta) under different temperatures and photoperiod. Philippine Journal of Science 139(2)

2008

Mirano-Bascos D., Tary-Lehmann M., Landry S.J. (2008). Antigen structure influences helper T-cell epitope dominance in the human immune response to HIV envelope glycoprotein gp120. European Journal of Immunology 38(5)

2007

Hedreyda C.T., Ranoa D.R.E. (2007). Sequence analysis of the Vibrio harveyi ornithine decarboxylase (odc) gene and detection of a gene homologue in Vibrio campbellii. Journal of General and Applied Microbiology 53(6)

2006

Azanza Ma.P.V., Azanza R.V., Vargas V.M.D., Hedreyda C.T. (2006). Bacterial endosymbionts of Pyrodinium bahamense var. compressum. Microbial Ecology 52(4)

Castroverde C.D.M., San Luis B.B., Monsalud R.G., Hedreyda C.T. (2006). Differential detection of vibrios pathogenic to shrimp by multiplex PCR. Journal of General and Applied Microbiology 52(5)

Franco P.F., Hedreyda C.T. (2006). Amplification and sequence analysis of the full length toxR gene in Vibrio harveyi. Journal of General and Applied Microbiology 52(5)

Ranoa D.R.E., Hedreyda C.T. (2006). Sequence analysis of partial toxR gene from Philippine Vibrio isolates and design of toxR-targeted primers for detection. Journal of General and Applied Microbiology 51(6)

San Luis B.B., Hedreyda C.T. (2006). Analysis of gene (vch) encoding hemolysin isolated and sequenced from Vibrio campbellii. Journal of General and Applied Microbiology 52(6)

2004

Conejero M.J.U., Hedreyda C.T. (2004). PCR detection of hemolysin (vhh) gene in Vibrio harveyi. Journal of General and Applied Microbiology 50(3)

2003

Monsalud R.G., Magbanua F.O., Tapay L.M., Hedreyda C.T., Olympia M.S.D., Migo V.P., Kurahashi M., Yokota A. (2003). Identification of pathogenic and non-pathogenic Vibrio strains from shrimp and shrimp farms in the Philippines. Journal of General and Applied Microbiology 49(5)

Conejero M.J.U., Hedreyda C.T. (2003). Isolation of partial toxR gene of Vibrio harveyi and design of toxR-targeted PCR primers for species detection. Journal of Applied Microbiology 95(3)

Saloma C., Perez G.J., Tapang G., Lim M., Palmes-Saloma C. (2003). Self-organized queuing and scale-free behavior in real escape panic. Proceedings of the National Academy of Sciences of the United States of America 100(21)

2000

Palmes-Saloma C., Saloma C. (2000). Long-depth imaging of specific gene expressions in whole-mount mouse embryos with single-photon excitation confocal fluorescence microscopy and FISH. Journal of Structural Biology 131(1)